Online Microbial Genomics Training in US Empire

Microbial genomics and metagenomics integrate sequencing technologies and computational analysis to profile microbial communities, characterize genomes, and detect functional traits such as antimicrobial resistance.

This instructor-led, live training (online or onsite) is designed for beginner-level to intermediate-level researchers and bioinformaticians who wish to perform hands-on analysis of microbial genomics and metagenomic sequencing data for government applications.

By the end of this training, participants will be able to:

• Describe common sequencing workflows and key file formats used in microbial genomics for government research.
• Perform quality control and preprocessing of raw NGS reads for accurate data analysis.
• Carry out taxonomic profiling using marker-based and k-mer approaches to identify microbial species.
• Assemble and annotate microbial genomes and plasmids for comprehensive genomic studies.
• Detect SNPs, build phylogenies, and interpret population structure to understand genetic diversity.
• Predict antimicrobial resistance genes and summarize functional profiles to inform public health policies.
• Use reproducible workflows with Conda, Docker, and notebook-based reports for transparent and accountable research.

Format of the Course

• Lectures introducing concepts and tools (20%).
• Hands-on practical sessions using example datasets (60%).
• Open discussions and guided analysis to help participants apply methods to their data (20%).

Course Customization Options

• To request a customized workshop focusing on clinical, environmental, or industrial metagenomics for government needs, please contact us to arrange.